Zhengyi Zhang, Vivien Su, Carrie B Wiese, Lijing Cheng, Dan Wang, Ya Cui, Aneesh Kallapur, Jason Kim, Xiaohui Wu, Peter H Tran, Zhenqi Zhou, David Casero, Wei Li, Andrea L Hevener, Karen Reue, Tamer Sallam.
A genome-wide ATLAS of liver chromatin accessibility reveals that sex dictates diet-induced nucleosome dynamics,
2026,
PLOS Biology (in press).
Full text at bioRxiv
2025
Frederick J Arnold^, Ya Cui^, Sebastian Michels, Michael R Colwin, Cameron M Stockford, Wenbin Ye, Vidhya Maheswari Jawahar, Karen Jansen-West, Julien Philippe, Ravinder Gulia, Yunzi Gou, Oliver H Tam, Sneha Menon, Wendy G Situ, Saira L Cazarez, Aryan Zandi, Kean CK Ehsani, Sierra Howard, Dennis W Dickson, Molly Gale Hammell, Mercedes Prudencio, Leonard Petrucelli, Wei Li, Albert R La Spada*
.
TDP-43 dysregulation of polyadenylation site selection is a defining feature of RNA misprocessing in amyotrophic lateral sclerosis and frontotemporal dementia,
2025,
The Journal of Clinical Investigation. Jun 2;135(11):e182088.
Full Paper
Ya Cui^*, Frederick J Arnold^, Jason Sheng Li, Jie Wu, Dan Wang, Julien Philippe, Michael R Colwin, Sebastian Michels, Chaorong Chen, Tamer Sallam, Leslie M Thompson*, Albert R La Spada*, Wei Li*.
Multi-omic quantitative trait loci link tandem repeat size variation to gene regulation in human brain,
2025,
Nature Genetics 57, pages369–378.
Full Paper
2024
Wenbin Ye^, Jason Sheng Li^, Wei Li, Ya Cui*.
Advancements and future perspectives of human tandem repeats,
2024,
Science bulletin, 69(23):3633-3636..
Full Paper
Ya Cui^*, Wenbin Ye^, Jason Sheng Li, Jingyi Jessica Li, Eric Vilain, Tamer Sallam, Wei Li*.
A genome-wide spectrum of tandem repeat expansions in 338,963 humans,
2024,
Cell 57, pages369–378.
Full Paper
2020-2023
Lei Li^, Xuelian Ma^, Ya Cui^, Maxime Rotival, Wenyan Chen, Xudong Zou, Ruofan Ding, Yangmei Qin, Qixuan Wang, Lluis Quintana-Murci, Wei Li*.
Immune-response 3′ UTR alternative polyadenylation quantitative trait loci contribute to variation in human complex traits and diseases,
2023,
Nature Communications 14, Article number: 8347.
Full Paper
Ya Cui^, Frederick J Arnold^, Fanglue Peng, Dan Wang, Jason Sheng Li, Sebastian Michels, Eric J Wagner, Albert R La Spada*, Wei Li*.
Alternative polyadenylation transcriptome-wide association study identifies APA-linked susceptibility genes in brain disorders,
2023,
Nature Communications 14, Article number: 583.
Full Paper
Ya Cui^, Fanglue Peng, Dan Wang, Yumei Li, Jason Sheng Li, Lei Li, Wei Li*
3′ aQTL-atlas: an atlas of 3′ UTR alternative polyadenylation quantitative trait loci across human normal tissues,
2022,
Nucleic Acids Research Pages D39–D45.
Full Paper
Ya Cui^*, Jason Sheng Li, Wei Li*
From Reads to Insights: Integrative Pipelines for Biological Interpretation of ATAC-seq Data,
2021,
Genomics, proteomics & bioinformatics Pages 519–521.
Full Paper
Zhe Cui^, Ya Cui^, Yan Gao, Tao Jiang, Tianyi Zang*, Yadong Wang*
Enhancement and Imputation of Peak Signal Enables Accurate Cell-Type Classification in scATAC-seq,
2021,
Frontiers in Genetics Volume 12 - 2021.
Full Paper
Ya Cui^, Zhe Cui^, Jianfeng Xu, Dapeng Hao, Jiejun Shi, Dan Wang, Hui Xiao, Xiaohong Duan, Runsheng Chen, Wei Li*
NG-Circos: next-generation Circos for data visualization and interpretation,
2020,
NAR Genomics and Bioinformatics Volume 2, Issue 3.
Full Paper
Before 2020
Full publications before 2020 can be found at Google Scholar.