Furong Huang^, Fuwen Yuan^, Kexin Li^, Ya Cui^, Lei Li^, Wenbin Ye^, Zhifen Cui, Jingyue Yan, Qiang Chen, Christopher Nicchitta, Yuebao Zhang, William Hankey, Jeffrey Everitt, Kai-Lieh Huang, Mu-En Wang, Ming Chen, Jiaoti Huang, Hongyan Wang, Eric J. Wagner, Xin Lu, Yizhou Dong, Wei Li*, Qianben Wang*.
Programmable engineering restores MHC-I and overcomes immune evasion in prostate cancer, 2026,
Nature Biomedical Engineering (in press).
Steffan Noe Niikanoff Christiansen, Stine Bøttcher Jacobsen, Jeppe Dyrberg Andersen, Ya Cui, Wei Li, Christian Staehr, Mikkel Meyer Andersen, Lia Crotti, Carla Spazzolini, Peter J. Schwartz, Mette Nyegaard*, Michael Toft Overgaard*
CALM1, CALM2, and CALM3 expression and translation efficiency provide insight into the severity of calmodulinopathy, 2026,
EP Europace (in press).
Zhengyi Zhang, Vivien Su, Carrie B Wiese, Lijing Cheng, Dan Wang, Ya Cui, Aneesh Kallapur, Jason Kim, Xiaohui Wu, Peter H Tran, Zhenqi Zhou, David Casero, Wei Li, Andrea L Hevener, Karen Reue, Tamer Sallam.
A genome-wide ATLAS of liver chromatin accessibility reveals that sex dictates diet-induced nucleosome dynamics,
2026,
PLOS Biology (in press).
Full text at bioRxiv
2025
Frederick J Arnold^, Ya Cui^, Sebastian Michels, Michael R Colwin, Cameron M Stockford, Wenbin Ye, Vidhya Maheswari Jawahar, Karen Jansen-West, Julien Philippe, Ravinder Gulia, Yunzi Gou, Oliver H Tam, Sneha Menon, Wendy G Situ, Saira L Cazarez, Aryan Zandi, Kean CK Ehsani, Sierra Howard, Dennis W Dickson, Molly Gale Hammell, Mercedes Prudencio, Leonard Petrucelli, Wei Li, Albert R La Spada*
.
TDP-43 dysregulation of polyadenylation site selection is a defining feature of RNA misprocessing in amyotrophic lateral sclerosis and frontotemporal dementia,
2025,
The Journal of Clinical Investigation. Jun 2;135(11):e182088.
Full Paper
Ya Cui^*, Frederick J Arnold^, Jason Sheng Li, Jie Wu, Dan Wang, Julien Philippe, Michael R Colwin, Sebastian Michels, Chaorong Chen, Tamer Sallam, Leslie M Thompson*, Albert R La Spada*, Wei Li*.
Multi-omic quantitative trait loci link tandem repeat size variation to gene regulation in human brain,
2025,
Nature Genetics 57, pages369–378.
Full Paper
2024
Wenbin Ye^, Jason Sheng Li^, Wei Li, Ya Cui*.
Advancements and future perspectives of human tandem repeats,
2024,
Science bulletin, 69(23):3633-3636..
Full Paper
Ya Cui^*, Wenbin Ye^, Jason Sheng Li, Jingyi Jessica Li, Eric Vilain, Tamer Sallam, Wei Li*.
A genome-wide spectrum of tandem repeat expansions in 338,963 humans,
2024,
Cell 57, pages369–378.
Full Paper
2020-2023
Lei Li^, Xuelian Ma^, Ya Cui^, Maxime Rotival, Wenyan Chen, Xudong Zou, Ruofan Ding, Yangmei Qin, Qixuan Wang, Lluis Quintana-Murci, Wei Li*.
Immune-response 3′ UTR alternative polyadenylation quantitative trait loci contribute to variation in human complex traits and diseases,
2023,
Nature Communications 14, Article number: 8347.
Full Paper
Ya Cui^, Frederick J Arnold^, Fanglue Peng, Dan Wang, Jason Sheng Li, Sebastian Michels, Eric J Wagner, Albert R La Spada*, Wei Li*.
Alternative polyadenylation transcriptome-wide association study identifies APA-linked susceptibility genes in brain disorders,
2023,
Nature Communications 14, Article number: 583.
Full Paper
Ya Cui^, Fanglue Peng, Dan Wang, Yumei Li, Jason Sheng Li, Lei Li, Wei Li*
3′ aQTL-atlas: an atlas of 3′ UTR alternative polyadenylation quantitative trait loci across human normal tissues,
2022,
Nucleic Acids Research Pages D39–D45.
Full Paper
Ya Cui^*, Jason Sheng Li, Wei Li*
From Reads to Insights: Integrative Pipelines for Biological Interpretation of ATAC-seq Data,
2021,
Genomics, proteomics & bioinformatics Pages 519–521.
Full Paper
Zhe Cui^, Ya Cui^, Yan Gao, Tao Jiang, Tianyi Zang*, Yadong Wang*
Enhancement and Imputation of Peak Signal Enables Accurate Cell-Type Classification in scATAC-seq,
2021,
Frontiers in Genetics Volume 12 - 2021.
Full Paper
Ya Cui^, Zhe Cui^, Jianfeng Xu, Dapeng Hao, Jiejun Shi, Dan Wang, Hui Xiao, Xiaohong Duan, Runsheng Chen, Wei Li*
NG-Circos: next-generation Circos for data visualization and interpretation,
2020,
NAR Genomics and Bioinformatics Volume 2, Issue 3.
Full Paper
Before 2020
Full publications before 2020 can be found at Google Scholar.