Display a AUXILIARYLINE module step by step

0. Download all files in this tutorial.

Download AUXILIARYLINE.zip and click *.html file(in AUXILIARYLINE.zip) to open this demo in local browser!.

1. Including AUXILIARYLINE configuration

    Example file: AUXILIARYLINE01.js

    Data structure

    Users should prepare the input data in the following format (separated by tabs).

    var AUXILIARYLINE01 = [ "AUXILIARYLINE01" , {
       startX: -100,
       startY: 0,
       endX: 100,
       endY: 0,
       AUXILIARYLINEType:"curve",
       AUXILIARYLINEControlPointX:0,
       AUXILIARYLINEControlPointY:-100,
       AUXILIARYLINELineType:"dot",
       AUXILIARYLINEDashArray:4,
       AUXILIARYLINEColor: "black",
       AUXILIARYLINEWidth: 2,
       AUXILIARYLINEMarker:true,
       AUXILIARYLINEMarkerType:"arrow",
       AUXILIARYLINEMarkerColor:"black",
       AUXILIARYLINEMarkerPosition:2,
   }];

2. Initialize AUXILIARYLINE configuration with data tag : AUXILIARYLINE01

    Prepare a <div> tag with “example” id to set the picture position your will draw in html, e.g.:

    NGCircos01 = new NGCircos(AUXILIARYLINE01,NGCircosGenome,{ // Initialize with "AUXILIARYLINE01" data tag

3. Source code

    When step 1 and 2 are finished, the configuration for NGCircos: 

    <button class="svg-action-btn download-img" style="height: 18px;line-height: 18px;padding: 0 11px;background: #FFFFFF;border: 1px #D9D9D9 solid;border-radius: 3px;display: inline-block;font-size: 12px;outline: none;color: black">Download png ↓</button>
<a href="javascript:(function () { var e = document.createElement('script');if (window.location.protocol === 'https:') { e.setAttribute('src', './lib/svg-crowbar.js'); } else { e.setAttribute('src', './lib/svg-crowbar.js'); } e.setAttribute('class', 'svg-crowbar'); document.body.appendChild(e); })();" style="height: 18px;line-height: 18px;padding: 0 11px;background: #FFFFFF;border: 1px #D9D9D9 solid;border-radius: 3px;display: inline-block;font-size: 12px;outline: none;color: black" >Download svg ↓</a>
<div id="NGCircos"></div>
                </div>
            </div>
            <div class="row">
                <div class="col-lg-12">
                    <div id="NGCircos"></div>
                </div>
            </div>
<!-- Data configuration -->
<script src="./lib/jquery.js"></script>
<script src="./lib/d3.js"></script>
<script src="./lib/NGCircos.js"></script>
<script src="js/AUXILIARYLINE01.js"></script>
<!-- Genome configuration -->
<script>
var NGCircosGenome = [[
  ["EGFR",1211],
  ]];
  NGCircos01 = new NGCircos(AUXILIARYLINE01, NGCircosGenome,{
  target:"NGCircos",
  svgWidth:900,
  svgHeight:600,
  svgClassName:"lollipop",
  chrPad:0.04,
  innerRadius:246,
  outerRadius:250,
  zoom:true,
  genomeFillColor:["#999999"],
  ticks:{
  display:false,
  len:5,
  color:"#000",
  textSize:10,
  textColor:"#000",
  scale:30000000,
  realLength:false,
  },
  genomeLabel:{
  display:true,
  textSize:15,
  textColor:"#000",
  dx:0.028,
  dy:"-0.55em",
  },
  genomeBorder:{
  display:true,
  borderColor:"#000",
  borderSize:0.5,
  },
  });
  NGCircos01.draw_genome(NGCircos01.genomeLength);
  NGCircos01.draw_genome(NGCircos01.genomeLength2);
</script>
<script src="./lib/saveSvgAsPng.js"></script>
<script>

      (function(){
        var downloadImg = getEle(".download-img"),
          imgName = getEle("."+NGCircos01.svgClassName);

        //          imgScale = getEle(".img-scale");

        downloadImg.addEventListener("click",function(){
          var mySvg = getEle("."+NGCircos01.svgClassName),
            //iImgScale = parseInt(imgScale.value) || 1,
            oImgName = imgName.value || NGCircos01.svgClassName;

//          saveSvgAsPng(mySvg, oImgName+".png", iImgScale);
          saveSvgAsPng(mySvg, oImgName+".png");

        })

        function getEle(obj){
          var d = document;
          return d.querySelector(obj);
        }
      })()
</script>

4. Visualization of AUXILIARYLINE data using NG-Circos

Download svg ↓