Download 3′aQTLs by single tissue:

Download page provides all the 3′aQTLs across 49 human normal tissues and a table of all human trait- and disease- associated 3′aQTLs for further analysis.
Guide

Tissue Main Sampling Site Sample Size 3′aQTLs File Name
Adipose - Subcutaneous Subcutaneous tissue beneath the leg's skin sample. 581  Adipose_Subcutaneous.3aQTL.txt.gz 
Adipose - Visceral (Omentum) Adipose tissue on the large fold of parietal peritoneum that hangs down from the greater curvature of the stomach, passing in front of the small intestines. 469  Adipose_Visceral_Omentum.3aQTL.txt.gz 
Adrenal Gland Left, followed by the right if necessary for sufficient aliquots. 233  Adrenal_Gland.3aQTL.txt.gz 
Artery - Aorta Ascending aorta or other thoracic regions (nonatherosclerotic). 387  Artery_Aorta.3aQTL.txt.gz 
Artery - Coronary Left and right, noncalcific regions only. 213  Artery_Coronary.3aQTL.txt.gz 
Artery - Tibial Left Tibial. Peripheral tibial artery from gastrocnemius region 584  Artery_Tibial.3aQTL.gz 
Brain - Amygdala Amygdala (sampled at Miami Brain Bank and preserved as fresh frozen tissue). 129  Brain_Amygdala.3aQTL.gz 
Brain - Anterior cingulate cortex (BA24) Anterior cingulate cortex (sampled at Miami Brain Bank and preserved as fresh frozen tissue). 147  Brain_Anterior_cingulate_cortex_BA24.3aQTL.gz 
Brain - Caudate (basal ganglia) Caudate (sampled at Miami Brain Bank and preserved as fresh frozen tissue). 194  Brain_Caudate_basal_ganglia.3aQTL.gz 
Brain - Cerebellar Hemisphere Cerebellar hemisphere (sampled at Miami Brain Bank and preserved as fresh frozen tissue). 175  Brain_Cerebellar_Hemisphere.3aQTL.gz 
Brain - Cerebellum Right cerebellum (sampled at donor collection site and preserved in PAXgene fixative). 209  Brain_Cerebellum.3aQTL.gz 
Brain - Cortex Right cerebral frontal pole cortex (sampled at donor collection site and preserved in PAXgene fixative). 205  Brain_Cortex.3aQTL.gz 
Brain - Frontal Cortex (BA9) Right cerebral frontal pole cortex (sampled at Miami Brain Bank and preserved as fresh frozen tissue). 175  Brain_Frontal_Cortex_BA9.3aQTL.gz 
Brain - Hippocampus Hippocampus (sampled at Miami Brain Bank and preserved as fresh frozen tissue). 165  Brain_Hippocampus.3aQTL.gz 
Brain - Hypothalamus Hypothalamus (sampled at Miami Brain Bank and preserved as fresh frozen tissue). 170  Brain_Hypothalamus.3aQTL.gz 
Brain - Nucleus accumbens (basal ganglia) Nucleus accumbens basal ganglia (sampled at Miami Brain Bank and preserved as fresh frozen tissue). 202  Brain_Nucleus_accumbens_basal_ganglia.3aQTL.gz 
Brain - Putamen (basal ganglia) Putamen basal ganglia (sampled at Miami Brain Bank and preserved as fresh frozen tissue). 170  Brain_Putamen_basal_ganglia.3aQTL.gz 
Brain - Spinal cord (cervical c-1) Spinal cord (sampled at Miami Brain Bank and preserved as fresh frozen tissue). 126  Brain_Spinal_cord_cervical_c-1.3aQTL.gz 
Brain - Substantia nigra Substantia nigra (sampled at Miami Brain Bank and preserved as fresh frozen tissue). 114  Brain_Spinal_cord_cervical_c-1.3aQTL.txt.gz 
Breast - Mammary Tissue Central breast subareolar region of the right breast, 1-2 cm under the skin surface of nipple region. 396  Breast_Mammary_Tissue.3aQTL.gz 
Cells - Cultured fibroblasts Cultured primary fibroblasts. 483  Cells_EBV-transformed_lymphocytes.3aQTL.txt.gz 
Cells - EBV-transformed lymphocytes Transformed lymphocytes. 147  Cells_Cultured_fibroblasts.3aQTL.txt.gz 
Colon - Sigmoid Sigmoid colon, Obtain muscularis only; discard mucosa. 318  Colon_Sigmoid.3aQTL.gz 
Colon - Transverse Transverse, Full thickness: mucosa and muscularis 368  Colon_Transverse.3aQTL.gz 
Esophagus - Gastroesophageal Junction Muscularis propria in the lowest portion of the esophagus just proximal to the stomach. 330  Esophagus_Gastroesophageal_Junction.3aQTL.gz 
Esophagus - Mucosa Squamous region (distal/lower third), at least 4 cm above gastroesophageal junction. 497  Esophagus_Mucosa.3aQTL.gz 
Esophagus - Muscularis Squamous region (distal/lower third), at least 4 cm above gastroesophageal junction. 465  Esophagus_Muscularis.3aQTL.gz 
Heart - Atrial Appendage Right atrial appendage, tip (if fatty or discolored, take more proximally) 372  Heart_Atrial_Appendage.3aQTL.gz 
Heart - Left Ventricle Anterior left ventricle, 1 cm above apex and 1 cm from left anterior descending coronary artery. 386  Heart_Left_Ventricle.3aQTL.gz 
Kidney - Cortex Left kidney cortex. 73  Liver.3aQTL.txt.gz 
Liver Central right lobe, 1 cm below capsule. 208  Liver.3aQTL.gz 
Lung Inferior segment of left upper lobe, 1 cm below the pleural surface. 515  Lung.3aQTL.gz 
Minor Salivary Gland Inner surface of lower lip. 144  Muscle_Skeletal.3aQTL.txt.gz 
Muscle - Skeletal The gastrocnemius muscle, 2 cm below the patella. 706  Muscle_Skeletal.3aQTL.gz 
Nerve - Tibial Left tibial. Peripheral tibial nerve from gastrocnemius region 532  Nerve_Tibial.3aQTL.gz 
Ovary Most normal regions of the left ovary (and right if necessary to obt ain sufficient aliquots). 167  Ovary.3aQTL.gz 
Pancreas Mid-portion (not tail). 305  Pancreas.3aQTL.gz 
Pituitary Entire pituitary gland. 237  Pituitary.3aQTL.gz 
Prostate Non-nodular region of representative region. 221  Prostate.3aQTL.gz 
Skin - Not Sun Exposed (Suprapubic) Extension of the abdominal incision to the suprapubic area avoiding pubic hair. 517  Skin_Not_Sun_Exposed.gz 
Skin - Sun Exposed (Lower leg) Left or right leg 2 cm below patella on medial side. 605  Skin_Sun_Exposed.3aQTL.gz 
Small Intestine - Terminal Ileum Thickened mucosa corresponding to lymphoid nodules (Peyer Patches) just proximal to the ileocecal valve in the most distal part of the small intestine. 174  Small_Intestine_Terminal_Ileum.3aQTL.gz 
Spleen Central region, 5 mm below capsule. 227  Spleen.3aQTL.gz 
Stomach Body (Gently rinse mucosa with normal saline before aliquot preparation) 324  Stomach.3aQTL.gz 
Testis Left testis (and right testis if necessary to obtain sufficient tissue for aliquots). 322  Testis.3aQTL.gz 
Thyroid Most grossly non-nodular normal regions from either side (whichever side is observed to be more normal). 574  Thyroid.3aQTL.gz 
Uterus Corpus. Bivalve uterus along endocervical canal to fundus. 129  Uterus.3aQTL.gz 
Vagina Anterior. 141  Vagina.3aQTL.gz 
Whole Blood Femoral vein; subclavian vein and heart are other possible sites. 670  Whole_Blood.3aQTL.gz 

Download human trait- and disease- associated 3′aQTLs:

Number of tissues Number of traits/diseases Number of 3′aQTLs Trait- and disease- associated 3′aQTLs
49 2,537 104,757  Traits_diseases_associated_3aQTLs.txt.gz